In 1986, when 30 years of his life had passed in working hard and studying, he decided to migrate, he moved from Azarshahr to the highest place of insurrection and a great spiritually environment, he rented a chamber there and started educating in religious science. In the opportunity of 3 months summer holidays he returned home and with insistence of his sister-in-law decided to get married and proposed to the daughter of Hajj Mirza Ali Moghadas Tabrizi, one of the knights, holy men in that territory.
Moghadas Tabrizi was a fighter who in addition to writing books and articles also published a magazine called "Aldine and Alhayat", the articles constantly reminded the ever increasing danger of colonial culture of the west, especially America and loss of Islamic culture.
Because the mercenary agents of the regime closed down the magazine after only 8 months, he published the book" Islam is in danger" which some of its subjects were a reminder of Imam's quotes in "jurisprudent province" and "Jihad of Akbar (the greates Jihad)". When the regime was insisting on religious and politic separation, Moghadas Tabrizi believed that these two can't be separated and should be together.
When Sheikh Hossein Ghafari was proposing, he told his future wife that: my wife should be aware that marrying someone that doesn’t have anything but poverty and doesn’t have any other job except for studying and doesn’t have a personal house and only has a chamber, I just hope we have a good future and we might be able to do something for Islam. In reply she said: if you are pleased, I am pleased and if I feel that you need to study more then I am ready to sacrifice more, and surely our life won't be just about having something to eat.
After marriage, they spent a few months in Azarshahr, and then returned to Qom so that he can continue high studies. In Qom he learned "Kafaye" and "out of earnings" from God Blass their soul Feiz Ghomi and the noble Khanasari and Ayatollah Najafi.
In this period although he spent most of his time studying, introspection and thinking, because of his wife's illness, he had to do some of the house chores and that was when he lost 3 of his 5 children to poverty, hunger and sickness.
His son explains that situation as:
"My father didn’t have any money to buy us powdered milk, so he put the left over breads in the sun and pounded it so it became flour and stirred it in boiled water and fed the kids with it, it was the kid's usual meal of the day"
He obtained the expenses of his life with the little pension he got from the religious school and the money that his brother used to send him. When the school was closed (3 months of summer holiday, Moharam and Safar and Ramadan), Sheikh Hossein Ghafari accompanied by other fellow riders went to a far away village of Azerbaijan and in additional to farming he advertised and publicized religion and lightened up their minds about the oppression they were going through and made all his effort to disgrace the 3 groups of Feudal, The king of territory and Akhond regime justification. Therefore during hi- residence in the village anarchy appeared and people overflew. Hajj Hossein Ghafari after his mission returned to Qom again. In 1951 to 1961 he was learning in presence of Ayatollah Broujerdi, so many times after the class they talked about the politics of the time shared the possible dangers.